Parses a Thermo RAW file containing mass spectra to an open file format
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
raw{:bash}
:file
Thermo RAW file
*.{raw,RAW}
spectra{:bash}
*.{mzML,mzML.gz,mgf,mgf.gz,parquet,parquet.gz}{:bash}
Mass spectra in open format
*.{mzML,mzML.gz,mgf,mgf.gz,parquet,parquet.gz}
versions_thermorawfileparser{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
thermorawfileparser{:bash}
The name of the tool
ThermoRawFileParser.sh --version{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono
