Select only sequences that match the filtering condition
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
sequences{:bash}
:file
FASTQ/FASTA file
*.{fq,fq.gz,fa,fa.gz}
filter_list{:bash}
BED file or a text file with a list of sequence names
*.{bed,lst}
*.{fq.gz,fa.gz}
*.gz{:bash}
versions_seqtk{:bash}
${task.process}{:bash}
:string
The name of the process
seqtk{:bash}
The name of the tool
seqtk 2>&1 | sed -n 's/^Version: //p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format
