Use seqkit to find/replace strings within sequences and sequence headers
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fastx{:bash}
:file
fasta/q file
*.{fasta,fastq,fa,fq,fas,fna,faa}*
*.fast*{:bash}
fasta/q file with replaced values
versions_seqkit{:bash}
${task.process}{:bash}
:string
The name of the process
seqkit{:bash}
The name of the tool
seqkit version | sed 's/seqkit v//'{:bash}
:eval
The expression to obtain the version of seqkit
versions{:bash}
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
