Description

Merges several idXML files into one idXML file.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

idxmls{:bash}

:file

List containing 2 or more idXML files e.g. [ 'file1.idXML', 'file2.idXML' ]

*.{idXML}

Output

name:type
description
pattern

idxml{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.idXML{:bash}

:file

Merged idXML output file

*.{idXML}

versions_openms{:bash}

${task.process}{:bash}

:string

The name of the process

openms{:bash}

:string

The name of the tool

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

openms{:bash}

:string

The name of the tool

FileInfo --help 2>&1 | sed -nE 's/^Version: ([0-9.]+).*/\1/p'{:bash}

:eval

The expression to obtain the version of the tool

Tools

openms
BSD

OpenMS is an open-source software C++ library for LC-MS data management and analyses