Description

Cluster sequences in linear time using MMSeqs2 linclust.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db_input{:bash}

:file

Input database

Output

name:type
description
pattern

db_cluster{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

${prefix}/{:bash}

:directory

a clustered MMseqs2 database

versions_mmseqs{:bash}

${task.process}{:bash}

:string

The name of the process

mmseqs{:bash}

:string

The name of the tool

mmseqs version{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

mmseqs{:bash}

:string

The name of the tool

mmseqs version{:bash}

:eval

The expression to obtain the version of the tool