Extract OME xml data from OME-tif
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
image{:bash}
:file
Path to image file containing OME metadata
xml{:bash}
*.xml.gz{:bash}
Compressed XML with OME tag metadata
versions_bftools{:bash}
${task.process}{:bash}
:string
The name of the process
bftools{:bash}
The name of the tool
showinf -version | sed -n '1s/[^ ]* //p'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Suite of tools to handle several imaging protocols.
